PAPERS and PRESENTATIONS
Our activities are also reflected in some public sources. These are scientific papers, presentations at conferences and popular publications.
Flexible design of multiple metagenomics classification pipelines with UGENE, Rose R, Golosova O, Sukhomlinov D, Tiunov A, Prosperi M. Bioinformatics, v. 35, issue 11, 1 June 2019, p.1963–1965; doi:10.1093/bioinformatics/bty901 published 25 October 2018
Open Source Web-/Videoconferencing Solutions and OpenMeetings Project, I. A. Arkhipets , D. E. Bezhetskov, Yu. E. Danilova, D. Yu. Kandrov, M. N. Solodovnik, A. A. Fedotov, Vestnik NSU. Series: Information Technologies, 2018, vol. 16, no. 1, p. 24–38. (In Russ.)
Workflows for classification of NGS metagenomic data, D. Sukhomlinov, Y. Algaer, A. Tiunov, E. Pushkova, O. Golosova,
oral presentation at BGRS\SB-2018 international conference, Novosibirsk, August 2018
Java on Elbrus, Roman Artemev, oral presenatation at the international conference Joker’2016, Saint Petersburg, October 2016
Features of Java implementation on the Elbrus processor, R.Artemev, S.Andreenko, oral presenatation at the conference JPoint, Novosibirsk, March 2016
Unipro UGENE NGS pipelines and components for variant calling, RNA-seq and ChIP-seq data analyses
O. Golosova, R. Henderson, Y. Vaskin, A. Gabrielian, G.Grekhov, V Nagarajan, A.J. Oler, M.Quiñones, D. Hurt, M.Fursov, Y.Huyen
doi:10.7717/peerj.644, November 2014
Unipro UGENE: a unified bioinformatics toolkit, Okonechnikov K, Golosova O, Fursov M, the UGENE team. Bioinformatics, v.28, issue 8, 15 April 2012, p. 1166–1167, doi:10.1093/bioinformatics/bts091, published 24 February 2012
ExpertDiscovery and UGENE integrated system for intelligent analysis of regulatory regions of genes , Y.Y. Vaskin, I.V. Khomicheva, E.V. Ignatieva, E.E. Vityaev, In Silico Biology v.11 (2011/2012), IOS Press, pp. 97-108
Analysis and Prediction of Regulatory Regions of Eukaryotic Genes by integrated UGENE and ExpertDiscovery Systems. Irina Khomicheva, Evgenii Vityaev, Yurii Vaskin, and Timur Shipilov. DMFGP ’11, The 5th International Workshop on Data Mining in Functional Genomics and Proteomics: Current Trends and Future Directions, September 5, 2011, Athens, Greece, pp. 43-52.