Publications

Our work can also be evaluated through public sources. These include scientific articles, conference presentations, and publications about the company and its projects.

USPARS Software Suite for Solving Systems of Linear Algebraic Equations in Modeling Tasks. Kostin V.I., Solovyev S.A., Golosov I.S., Danilova Y.E., Semenov A.L., Bykov D.O., Cherepanov M.E. Science and Technology of Siberia, N3 (10) 2023, pp. 24-28, Novosibirsk, 2023

Unipro UGENE — Free Product for Visualization, Analysis, and Processing of Data in Molecular Biology and Bioinformatics. Sukhomlinov D.I., Danilova Y.E. Science and Technology of Siberia, N3 (10) 2023, pp. 29-33, Novosibirsk, 2023

USPARS — Parallel Direct Solver for Sparse Linear Systems of Equations. Bykov D.O., Kostin V.I., Solovyev S.A. Proceedings of the International Conference "Supercomputing Days in Russia", Moscow, 2023

USPARS Software Package for Large Sparse Systems. D.O. Bykov, V.I. Kostin, S.A. Solovyev. Abstracts of the 1st All-Russian School-Seminar NCFC "Center for Supercomputer Architecture Research", pp. 24-25, Sarov, 2023

Efficient Direct Sparse Solver for Different Processor Architectures. M. Cherepanov, V.Kostin, A.Semenov, S.Solovyev. Abstracts of the International Conference "Marchuk Scientific Readings-2022", p. 99, Novosibirsk, 2022

GeneCut – a Software Tool for Oligonucleotide Design, Assembly, and Cloning of Gene Constructs. Sukhomlinov D., Pereverzev I., Bondiuk S., Seryakov A. DOI: 10.18699/SBB-2022-671 Proceedings of the International Conference BGRS/SB-2022

Developing a Direct Sparse Solver for the Elbrus Processors. M. Cherepanov, V.Kostin, A.Semenov, S.Solovyev. Abstracts of the International Conference "Marchuk Scientific Readings-2021", p. 121, Novosibirsk, 2021.

GeneCut — Software Tool for Oligonucleotide Design; Assembly and Cloning of Gene Constructs, Sukhomlinov D. I., Pereverzev I.M., Poster Presentation at the International Biotech Forum OpenBio — 2021, Novosibirsk.

OpenMetings — Video Conferencing on the Rise, SibAcademSoft Association Portal, September 2020

Congratulations on the 25th Anniversary of the Company from NF ITMiVT, December 2018

Flexible Design of Multiple Metagenomics Classification Pipelines with UGENE, Rose R, Golosova O, Sukhomlinov D, Tiunov A, Prosperi M. Bioinformatics, v. 35, issue 11, 1 June 2019, p. 1963–1965; doi:10.1093/bioinformatics/bty901, published 25 October 2018

OpenMeetings Free Video Conferencing is Developing in Akademgorodok, SibAcademSoft Association Portal, March 2018

Open Solutions for Web/Video Conferencing and the OpenMeetings Project, Arkhipets I., Bejeckov D., Danilova Y., Kandrov D., Solodovnik M., Fedotov A. NSU Bulletin, Series: Information Technology, 2018, vol. 16, N.1, pp. 24-37

Workflows for Classification of NGS Metagenomic Data, D. Sukhomlinov, Y. Algaer, A. Tiunov, E. Pushkova, O. Golosova — Oral Presentation at the International Conference BGRS 2018, Novosibirsk, August 2018

"Elbrus" Guarding National Interests, SibAcademSoft Association Portal, April 2017

Java on "Elbrus" – Presentation by R. Artemyev at the Joker’2016 Conference, St. Petersburg, October 2016

Features of Java Implementation on the "Elbrus" Processor – Presentation by R. Artemyev and S. Andreenko at the JPoint Conference, Novosibirsk, March 2016

Business on Molecules: 6 Startups Making Money on Genetic Research, Elena Krauzova, 11 Feb 2016, Forbes

Unipro UGENE NGS Pipelines and Components for Variant Calling, RNA-seq and ChIP-seq Data Analyses, O. Golosova, R. Henderson, Y. Vaskin, A. Gabrielian, G. Grekhov, V Nagarajan, A.J. Oler, M. Quiñones, D. Hurt, M. Fursov, Y. Huyen, doi:10.7717/peerj.644, PeerJ, November 2014

20 Years Without the Right to Transfer — Interview for the 20th Anniversary of the Company, "Navigator" No. 51 (919) of 27.12.13

Unipro Celebrates Its 20th Anniversary with a Prestigious Diploma — Akadempark Portal, November 2013

The Free Spirit of Bioinformatics, Y.Y. Vaskin, Y.E. Danilova, "Science Firsthand", N1, pp. 60-67, 2013

SNP-MED Software Suite for Analyzing the Impact of Single Nucleotide Polymorphisms on the Function of Genes Associated with the Development of Socially Significant Diseases, N.L. Podkolodny, D.A. Afonnikov, Y.Y. Vaskin, L.O. Bryzgalov, V.A. Ivanisenko, P.S. Demenkov, M.P. Ponomarenko, D.A. Rasskazov, K.A. Gunbin, I.V. Protsyuk, I.Y. Shutov, P.N. Leontiev, M.Y. Fursov, N.P. Bondar, E.V. Antontseva, T.I. Merkulova, N.A. Kolchanov, Vavilov Journal of Genetics and Breeding, vol. 17, 4/1, 2013, pp. 577-588

Unipro UGENE: a Unified Bioinformatics Toolkit, Okonechnikov K, Golosova O, Fursov M, the UGENE Team. Bioinformatics, v.28, issue 8, 15 April 2012, p. 1166–1167, doi:10.1093/bioinformatics/bts091, published 24 February 2012